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126
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BMCBI
2006
102views more  BMCBI 2006»
15 years 3 months ago
SNA - a toolbox for the stoichiometric analysis of metabolic networks
Background: Despite recent algorithmic and conceptual progress, the stoichiometric network analysis of large metabolic models remains a computationally challenging problem. Result...
Robert Urbanczik
135
Voted
BMCBI
2005
86views more  BMCBI 2005»
15 years 3 months ago
WebArray: an online platform for microarray data analysis
Background: Many cutting-edge microarray analysis tools and algorithms, including commonly used limma and affy packages in Bioconductor, need sophisticated knowledge of mathematic...
Xiaoqin Xia, Michael McClelland, Yipeng Wang
181
Voted
BMCBI
2004
156views more  BMCBI 2004»
15 years 3 months ago
GeneXplorer: an interactive web application for microarray data visualization and analysis
Background: When publishing large-scale microarray datasets, it is of great value to create supplemental websites where either the full data, or selected subsets corresponding to ...
Christian A. Rees, Janos Demeter, John C. Matese, ...
155
Voted
ESEM
2010
ACM
15 years 2 months ago
Strengthening the empirical analysis of the relationship between Linus' Law and software security
Open source software is often considered to be secure because large developer communities can be leveraged to find and fix security vulnerabilities. Eric Raymond states Linus’ L...
Andrew Meneely, Laurie A. Williams
159
Voted
ICST
2009
IEEE
15 years 10 months ago
Using JML Runtime Assertion Checking to Automate Metamorphic Testing in Applications without Test Oracles
It is challenging to test applications and functions for which the correct output for arbitrary input cannot be known in advance, e.g. some computational science or machine learni...
Christian Murphy, Kuang Shen, Gail E. Kaiser