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BMCBI
2008
138views more  BMCBI 2008»
14 years 9 months ago
Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles
Background: The hierarchical clustering tree (HCT) with a dendrogram [1] and the singular value decomposition (SVD) with a dimension-reduced representative map [2] are popular met...
Yin-Jing Tien, Yun-Shien Lee, Han-Ming Wu, Chun-Ho...
ASPDAC
2004
ACM
96views Hardware» more  ASPDAC 2004»
15 years 2 months ago
Register binding and port assignment for multiplexer optimization
- Data path connection elements, such as multiplexers, consume a significant amount of area on a VLSI chip, especially for FPGA designs. Multiplexer optimization is a difficult pro...
Deming Chen, Jason Cong
SIGMETRICS
2009
ACM
151views Hardware» more  SIGMETRICS 2009»
15 years 3 months ago
MapReduce optimization using regulated dynamic prioritization
We present a system for allocating resources in shared data and compute clusters that improves MapReduce job scheduling in three ways. First, the system uses regulated and user-as...
Thomas Sandholm, Kevin Lai
75
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FPGA
2003
ACM
123views FPGA» more  FPGA 2003»
15 years 2 months ago
Wire type assignment for FPGA routing
The routing channels of an FPGA consist of wire segments of various types providing the tradeoff between performance and routability. In the routing architectures of recently dev...
Seokjin Lee, Hua Xiang, D. F. Wong, Richard Y. Sun
IPPS
2000
IEEE
15 years 1 months ago
Parallel Computation for Chromosome Reconstruction on a Cluster of Workstations
Reconstructing a physical map of a chromosome from a genomic library presents a central computational problem in genetics. Physical map reconstruction in the presence of errors is...
Suchendra M. Bhandarkar, Salem Machaka, Sanjay She...