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» Optimization on Support Vector Machines
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CIBCB
2007
IEEE
15 years 4 months ago
A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins
Abstract— We applied Support Vector Machines to the prediction of the subcellular localization of transmembrane proteins, and compared the performance of different sequence kerne...
Stefan Maetschke, Marcus Gallagher, Mikael Bod&eac...
BMCBI
2011
14 years 1 months ago
Elastic SCAD as a novel penalization method for SVM classification tasks in high-dimensional data
Background: Classification and variable selection play an important role in knowledge discovery in highdimensional data. Although Support Vector Machine (SVM) algorithms are among...
Natalia Becker, Grischa Toedt, Peter Lichter, Axel...
95
Voted
UAI
2003
14 years 11 months ago
On the Convergence of Bound Optimization Algorithms
Many practitioners who use EM and related algorithms complain that they are sometimes slow. When does this happen, and what can be done about it? In this paper, we study the gener...
Ruslan Salakhutdinov, Sam T. Roweis, Zoubin Ghahra...
85
Voted
BMCBI
2006
120views more  BMCBI 2006»
14 years 10 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
VIP
2003
14 years 11 months ago
Optimal Selection of Image Segmentation Algorithms Based on Performance Prediction
Using different algorithms to segment different images is a quite straightforward strategy for automated image segmentation. But the difficulty of the optimal algorithm selection ...
Yong Xia, David Dagan Feng, Rongchun Zhao