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2003
IEEE
15 years 10 months ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
CSB
2003
IEEE
106views Bioinformatics» more  CSB 2003»
15 years 10 months ago
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss
As gene order evolves through a variety of chromosomal rearrangements, conserved segments provide important insight into evolutionary relationships and functional roles of genes. ...
Jun Huan, Jan Prins, Wei Wang 0010, Todd J. Vision
DATE
2003
IEEE
101views Hardware» more  DATE 2003»
15 years 10 months ago
Energy Estimation for Extensible Processors
This paper presents an efficient methodology for estimating the energy consumption of application programs running on extensible processors. Extensible processors, which are incr...
Yunsi Fei, Srivaths Ravi, Anand Raghunathan, Niraj...
DATE
2003
IEEE
65views Hardware» more  DATE 2003»
15 years 10 months ago
Masking the Energy Behavior of DES Encryption
Smart cards are vulnerable to both invasive and non-invasive attacks. Specifically, non-invasive attacks using power and timing measurements to extract the cryptographic key has d...
Hendra Saputra, Narayanan Vijaykrishnan, Mahmut T....
FOCS
2003
IEEE
15 years 10 months ago
Approximation Algorithms for Asymmetric TSP by Decomposing Directed Regular Multigraphs
A directed multigraph is said to be d-regular if the indegree and outdegree of every vertex is exactly d. By Hall’s theorem one can represent such a multigraph as a combination ...
Haim Kaplan, Moshe Lewenstein, Nira Shafrir, Maxim...
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