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» Over-optimism in bioinformatics: an illustration
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BIBE
2001
IEEE
188views Bioinformatics» more  BIBE 2001»
15 years 1 months ago
Interrelated Two-way Clustering: An Unsupervised Approach for Gene Expression Data Analysis
DNA arrays can be used to measure the expression levels of thousands of genes simultaneously. Currently most research focuses on the interpretation of the meaning of the data. How...
Chun Tang, Li Zhang, Aidong Zhang, Murali Ramanath...
BIRD
2008
Springer
123views Bioinformatics» more  BIRD 2008»
14 years 12 months ago
E-BioFlow: Different Perspectives on Scientific Workflows
We introduce a new type of workflow design system called e-BioFlow and illustrate it by means of a simple sequence alignment workflow. E-BioFlow, intended to model advanced scienti...
Ingo H. C. Wassink, Han Rauwerda, Paul E. van der ...
ISMDA
2005
Springer
15 years 3 months ago
Extracting Molecular Diversity Between Populations Through Sequence Alignments
The use of sequence alignments for establishing protein homology relationships has an extensive tradition in the field of bioinformatics, and there is an increasing desire for more...
Steinar Thorvaldsen, Tor Flå, Nils Willassen
WABI
2004
Springer
15 years 3 months ago
Novel Tree Edit Operations for RNA Secondary Structure Comparison
We describe an algorithm for comparing two RNA secondary structures coded in the form of trees that introduces two novel operations, called node fusion and edge fusion, besides the...
Julien Allali, Marie-France Sagot
71
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WABI
2004
Springer
107views Bioinformatics» more  WABI 2004»
15 years 3 months ago
Phylogenetic Super-networks from Partial Trees
—In practice, one is often faced with incomplete phylogenetic data, such as a collection of partial trees or partial splits. This paper poses the problem of inferring a phylogene...
Daniel H. Huson, Tobias Dezulian, Tobias H. Kl&oum...