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» Overview of the IBM Blue Gene P Project
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PVM
2009
Springer
15 years 4 months ago
MPI on a Million Processors
Petascale machines with close to a million processors will soon be available. Although MPI is the dominant programming model today, some researchers and users wonder (and perhaps e...
Pavan Balaji, Darius Buntinas, David Goodell, Will...
68
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IPPS
2007
IEEE
15 years 3 months ago
Building the Tree of Life on Terascale Systems
Bayesian phylogenetic inference is an important alternative to maximum likelihood-based phylogenetic method. However, inferring large trees using the Bayesian approach is computat...
Xizhou Feng, Kirk W. Cameron, Carlos P. Sosa, Bria...
PVM
2010
Springer
14 years 8 months ago
Enabling Concurrent Multithreaded MPI Communication on Multicore Petascale Systems
With the ever-increasing numbers of cores per node on HPC systems, applications are increasingly using threads to exploit the shared memory within a node, combined with MPI across ...
Gábor Dózsa, Sameer Kumar, Pavan Bal...
CSE
2011
IEEE
13 years 9 months ago
Performance Modeling of Hybrid MPI/OpenMP Scientific Applications on Large-scale Multicore Cluster Systems
In this paper, we present a performance modeling framework based on memory bandwidth contention time and a parameterized communication model to predict the performance of OpenMP, M...
Xingfu Wu, Valerie E. Taylor
BMCBI
2004
156views more  BMCBI 2004»
14 years 9 months ago
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
Martin Schmollinger, Kay Nieselt, Michael Kaufmann...