Petascale machines with close to a million processors will soon be available. Although MPI is the dominant programming model today, some researchers and users wonder (and perhaps e...
Pavan Balaji, Darius Buntinas, David Goodell, Will...
Bayesian phylogenetic inference is an important alternative to maximum likelihood-based phylogenetic method. However, inferring large trees using the Bayesian approach is computat...
Xizhou Feng, Kirk W. Cameron, Carlos P. Sosa, Bria...
With the ever-increasing numbers of cores per node on HPC systems, applications are increasingly using threads to exploit the shared memory within a node, combined with MPI across ...
In this paper, we present a performance modeling framework based on memory bandwidth contention time and a parameterized communication model to predict the performance of OpenMP, M...
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
Martin Schmollinger, Kay Nieselt, Michael Kaufmann...