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» Parallel Algorithms for Singular Value Decomposition
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HPCC
2007
Springer
15 years 3 months ago
A Block JRS Algorithm for Highly Parallel Computation of SVDs
This paper presents a new algorithm for computing the singular value decomposition (SVD) on multilevel memory hierarchy architectures. This algorithm is based on one-sided JRS iter...
Mostafa I. Soliman, Sanguthevar Rajasekaran, Reda ...
BMCBI
2010
118views more  BMCBI 2010»
14 years 9 months ago
svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identifica
Background: Comparative analysis of gene expression profiling of multiple biological categories, such as different species of organisms or different kinds of tissue, promises to e...
Wensheng Zhang, Andrea Edwards, Wei Fan, Dongxiao ...
CDC
2009
IEEE
138views Control Systems» more  CDC 2009»
15 years 1 months ago
Semidefinite programming methods for system realization and identification
We describe semidefinite programming methods for system realization and identification. For each of these two applications, a variant of a simple subspace algorithm is presented, i...
Zhang Liu, Lieven Vandenberghe
JCPHY
2011
109views more  JCPHY 2011»
14 years 15 days ago
Fast construction of hierarchical matrix representation from matrix-vector multiplication
We develop a hierarchical matrix construction algorithm using matrixvector multiplications, based on the randomized singular value decomposition of low-rank matrices. The algorith...
Lin Lin, Jianfeng Lu, Lexing Ying
86
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BIBE
2010
IEEE
148views Bioinformatics» more  BIBE 2010»
14 years 4 months ago
Prediction of Gene Ontology Annotations Based on Gene Functional Clustering
We propose an algorithm that predicts potentially missing Gene Ontology annotations, in order to speed up the time-consuming annotation curation process. The proposed method extend...
Marco Tagliasacchi, Roberto Sarati, Marco Masserol...