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ALGORITHMICA
2006
163views more  ALGORITHMICA 2006»
14 years 9 months ago
Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines
Phylogenetic analysis is an area of computational biology concerned with the reconstruction of evolutionary relationships between organisms, genes, and gene families. Maximum likel...
Thomas M. Keane, Andrew J. Page, Thomas J. Naughto...
ICPP
2009
IEEE
15 years 4 months ago
Load Balance in the Phylogenetic Likelihood Kernel
—Recent advances in DNA sequencing techniques have led to an unprecedented accumulation and availability of molecular sequence data that needs to be analyzed. This data explosion...
Alexandros Stamatakis, Michael Ott
FPL
2009
Springer
79views Hardware» more  FPL 2009»
15 years 2 months ago
A reconfigurable architecture for the Phylogenetic Likelihood Function
As FPGA devices become larger, more coarse-grain modules coupled with large scale reconfigurable fabric become available, thus enabling new classes of applications to run effici...
Nikolaos Alachiotis, Alexandros Stamatakis, Euripi...
IPPS
2007
IEEE
15 years 3 months ago
RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine
Computational phylogeny is a challenging application even for the most powerful supercomputers. It is also an ideal candidate for benchmarking emerging multiprocessor architecture...
Filip Blagojevic, Alexandros Stamatakis, Christos ...
ICCS
2009
Springer
14 years 7 months ago
Parallel MLEM on Multicore Architectures
Abstract. The efficient use of multicore architectures for sparse matrixvector multiplication (SpMV) is currently an open challenge. One algorithm which makes use of SpMV is the ma...
Tilman Küstner, Josef Weidendorfer, Jasmine S...