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HPDC
2010
IEEE
15 years 5 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...
120
Voted
DAC
2009
ACM
16 years 5 months ago
Multicore parallel min-cost flow algorithm for CAD applications
Computational complexity has been the primary challenge of many VLSI CAD applications. The emerging multicore and manycore microprocessors have the potential to offer scalable perf...
Yinghai Lu, Hai Zhou, Li Shang, Xuan Zeng
POPL
2009
ACM
15 years 11 months ago
Declarative aspects of memory management in the concurrent collections parallel programming model
Concurrent Collections (CnC)[8] is a declarative parallel language that allows the application developer to express their parallel application as a collection of high-level comput...
Zoran Budimlic, Aparna Chandramowlishwaran, Kathle...
CF
2009
ACM
15 years 11 months ago
Scheduling dynamic parallelism on accelerators
Resource management on accelerator based systems is complicated by the disjoint nature of the main CPU and accelerator, which involves separate memory hierarhcies, different degr...
Filip Blagojevic, Costin Iancu, Katherine A. Yelic...
132
Voted
IPPS
2007
IEEE
15 years 11 months ago
Achieving Reliable Parallel Performance in a VoD Storage Server Using Randomization and Replication
This paper investigates randomization and replication as strategies to achieve reliable performance in disk arrays targeted for video-on-demand (VoD) workloads. A disk array can p...
Yung Ryn Choe, Vijay S. Pai