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IPPS
2007
IEEE
16 years 17 days ago
Low-Overhead LogGP Parameter Assessment for Modern Interconnection Networks
Network performance measurement and prediction is very important to predict the running time of high performance computing applications. The LogP model family has been proven to b...
Torsten Hoefler, Andre Lichei, Wolfgang Rehm
HIPC
2007
Springer
16 years 12 days ago
Molecular Dynamics Simulations on Commodity GPUs with CUDA
Molecular dynamics simulations are a common and often repeated task in molecular biology. The need for speeding up this treatment comes from the requirement for large system simula...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang ...
IPPS
2006
IEEE
16 years 8 days ago
MT-ClustalW: multithreading multiple sequence alignment
ClustalW is the most widely used tool for aligning multiple protein or nucleotide sequences. The alignment is achieved via three stages: pairwise alignment, guide tree generation ...
K. Chaichoompu, Surin Kittitornkun, Sissades Tongs...
ICAPR
2005
Springer
15 years 11 months ago
Unsupervised Markovian Segmentation on Graphics Hardware
Abstract. This contribution shows how unsupervised Markovian segmentation techniques can be accelerated when implemented on graphics hardware equipped with a Graphics Processing Un...
Pierre-Marc Jodoin, Jean-François St-Amour,...
ICCSA
2004
Springer
15 years 11 months ago
Advanced Simulation Technique for Modeling Multiphase Fluid Flow in Porous Media
Modeling fluid flow in a porous medium is a challenging computational problem. It involves highly heterogeneous distributions of porous medium property, various fluid flow char...
Jong G. Kim, Hyoung-Woo Park