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PPOPP
2006
ACM
15 years 9 months ago
Performance characterization of molecular dynamics techniques for biomolecular simulations
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwa...
PPOPP
2006
ACM
15 years 9 months ago
Exploiting distributed version concurrency in a transactional memory cluster
We investigate a transactional memory runtime system providing scaling and strong consistency for generic C++ and SQL applications on commodity clusters. We introduce a novel page...
Kaloian Manassiev, Madalin Mihailescu, Cristiana A...
DNA
2005
Springer
154views Bioinformatics» more  DNA 2005»
15 years 9 months ago
Design of Autonomous DNA Cellular Automata
Recent experimental progress in DNA lattice construction, DNA robotics, and DNA computing provides the basis for designing DNA cellular computing devices, i.e. autonomous nano-mech...
Peng Yin, Sudheer Sahu, Andrew J. Turberfield, Joh...
GISCIENCE
2004
Springer
130views GIS» more  GISCIENCE 2004»
15 years 9 months ago
Comparing Exact and Approximate Spatial Auto-regression Model Solutions for Spatial Data Analysis
The spatial auto-regression (SAR) model is a popular spatial data analysis technique, which has been used in many applications with geo-spatial datasets. However, exact solutions f...
Baris M. Kazar, Shashi Shekhar, David J. Lilja, Ra...
181
Voted
IPPS
2003
IEEE
15 years 8 months ago
Applying Aspect-Orient Programming Concepts to a Component-Based Programming Model
Abstract— The execution environments For scientific applications have evolved significantly over the years. Vector and parallel architectures have provided significantly faste...
Thomas Eidson, Jack Dongarra, Victor Eijkhout