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» Parallelism in Gene Assembly
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BTW
2003
Springer
94views Database» more  BTW 2003»
15 years 3 months ago
Comparative Evaluation of Microarray-based Gene Expression Databases
Microarrays make it possible to monitor the expression of thousands of genes in parallel thus generating huge amounts of data. So far, several databases have been developed for man...
Hong Hai Do, Toralf Kirsten, Erhard Rahm
FCCM
2007
IEEE
117views VLSI» more  FCCM 2007»
15 years 4 months ago
FPGA Acceleration of Gene Rearrangement Analysis
In this paper we present our work toward FPGA acceleration of phylogenetic reconstruction, a type of analysis that is commonly performed in the fields of systematic biology and co...
Jason D. Bakos
CASES
2001
ACM
15 years 1 months ago
A compiler framework for mapping applications to a coarse-grained reconfigurable computer architecture
The rapid growth of silicon densities has made it feasible to deploy reconfigurable hardware as a highly parallel computing platform. However, in most cases, the application needs...
Girish Venkataramani, Walid A. Najjar, Fadi J. Kur...
CCGRID
2005
IEEE
15 years 3 months ago
Secret sequence comparison on public grid computing resources
Once a new gene has been sequenced, it must be verified whether or not it is similar to previously sequenced genes. In many cases, the organization that sequenced a potentially n...
Ken-ichi Kurata, Hiroshi Nakamura, Vincent Breton
IPPS
2007
IEEE
15 years 4 months ago
An Adaptive Semantic Filter for Blue Gene/L Failure Log Analysis
— Frequent failure occurrences are becoming a serious concern to the community of high-end computing, especially when the applications and the underlying systems rapidly grow in ...
Yinglung Liang, Yanyong Zhang, Hui Xiong, Ramendra...