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AB
2008
Springer
15 years 4 months ago
Algorithms for Inference, Analysis and Control of Boolean Networks
Boolean networks (BNs) are known as a mathematical model of genetic networks. In this paper, we overview algorithmic aspects of inference, analysis and control of BNs while focusin...
Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamur...
AAAI
2006
14 years 11 months ago
Local-Search Techniques for Boolean Combinations of Pseudo-Boolean Constraints
Some search problems are most directly specified by boolean combinations of pseudo-boolean constraints. We study a logic PL(PB) whose formulas are of this form, and design local-s...
Lengning Liu, Miroslaw Truszczynski
BMCBI
2010
176views more  BMCBI 2010»
14 years 9 months ago
Bayesian statistical modelling of human protein interaction network incorporating protein disorder information
Background: We present a statistical method of analysis of biological networks based on the exponential random graph model, namely p2-model, as opposed to previous descriptive app...
Svetlana Bulashevska, Alla Bulashevska, Roland Eil...
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RECOMB
2010
Springer
15 years 4 months ago
Incremental Signaling Pathway Modeling by Data Integration
Constructing quantitative dynamic models of signaling pathways is an important task for computational systems biology. Pathway model construction is often an inherently incremental...
Geoffrey Koh, David Hsu, P. S. Thiagarajan
ICLP
2010
Springer
15 years 1 months ago
A Logical Paradigm for Systems Biology (Invited Talk)
[6]. An SBML model can be interpreted in Biocham at three abstraction levels: • the Boolean semantics (asynchronuous Boolean state transitions on the presence/absence of molecule...
François Fages