Boolean networks (BNs) are known as a mathematical model of genetic networks. In this paper, we overview algorithmic aspects of inference, analysis and control of BNs while focusin...
Some search problems are most directly specified by boolean combinations of pseudo-boolean constraints. We study a logic PL(PB) whose formulas are of this form, and design local-s...
Background: We present a statistical method of analysis of biological networks based on the exponential random graph model, namely p2-model, as opposed to previous descriptive app...
Svetlana Bulashevska, Alla Bulashevska, Roland Eil...
Constructing quantitative dynamic models of signaling pathways is an important task for computational systems biology. Pathway model construction is often an inherently incremental...
[6]. An SBML model can be interpreted in Biocham at three abstraction levels: • the Boolean semantics (asynchronuous Boolean state transitions on the presence/absence of molecule...