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» Pathway Logic: Executable Models of Biological Networks
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91
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BMCBI
2005
111views more  BMCBI 2005»
14 years 11 months ago
Improving interoperability between microbial information and sequence databases
Background: Biological resources are essential tools for biomedical research. Their availability is promoted through on-line catalogues. Common Access to Biological Resources and ...
Paolo Romano, Peter Dawyndt, Francesca Piersigilli...
BIOSYSTEMS
2007
115views more  BIOSYSTEMS 2007»
14 years 11 months ago
Evolving fuzzy rules to model gene expression
This paper develops an algorithm that extracts explanatory rules from microarray data, which we treat as time series, using genetic programming (GP) and fuzzy logic. Reverse polis...
Ricardo Linden, Amit Bhaya
94
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FMSD
2006
131views more  FMSD 2006»
14 years 11 months ago
Specification and analysis of the AER/NCA active network protocol suite in Real-Time Maude
This paper describes the application of the Real-Time Maude tool and the Maude formal methodology to the specification and analysis of the AER/NCA suite of active network multicast...
Peter Csaba Ölveczky, José Meseguer, C...
EPIA
2003
Springer
15 years 4 months ago
jcc: Integrating Timed Default Concurrent Constraint Programming into Java
Abstract. This paper describes jcc, an integration of the timed default concurrent constraint programming framework [16] (Timed Default cc) into JAVA [7]. jcc is intended for use i...
Vijay A. Saraswat, Radha Jagadeesan, Vineet Gupta
111
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SIAMSC
2008
149views more  SIAMSC 2008»
14 years 11 months ago
Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
In systems biology, the stochastic description of biochemical reaction kinetics is increasingly being employed to model gene regulatory networks and signalling pathways. Mathematic...
Peter Deuflhard, Wilhelm Huisinga, T. Jahnke, Mich...