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92
Voted
CIBCB
2005
IEEE
15 years 5 months ago
Heuristic Algorithm for Computing Reversal Distance with MultiGene Families via Binary Integer Programming
— Hannenhalli and Pevzner developed the first polynomial-time algorithm for the combinatorial problem of sorting of signed genomic data. Their algorithm solves the minimum numbe...
Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikae...
TCBB
2010
137views more  TCBB 2010»
14 years 6 months ago
The Metropolized Partial Importance Sampling MCMC Mixes Slowly on Minimum Reversal Rearrangement Paths
Markov chain Monte Carlo has been the standard technique for inferring the posterior distribution of genome rearrangement scenarios under a Bayesian approach. We present here a neg...
István Miklós, Bence Melykuti, Krist...
CORR
2007
Springer
141views Education» more  CORR 2007»
14 years 11 months ago
Acyclicity of Preferences, Nash Equilibria, and Subgame Perfect Equilibria: a Formal and Constructive Equivalence
Abstract. Sequential game and Nash equilibrium are basic key concepts in game theory. In 1953, Kuhn showed that every sequential game has a Nash equilibrium. The two main steps of ...
Stéphane Le Roux
96
Voted
STOC
1997
ACM
125views Algorithms» more  STOC 1997»
15 years 3 months ago
An Interruptible Algorithm for Perfect Sampling via Markov Chains
For a large class of examples arising in statistical physics known as attractive spin systems (e.g., the Ising model), one seeks to sample from a probability distribution π on an...
James Allen Fill
80
Voted
SPAA
2003
ACM
15 years 4 months ago
Asynchronous parallel disk sorting
We develop an algorithm for parallel disk sorting, whose I/O cost approaches the lower bound and that guarantees almost perfect overlap between I/O and computation. Previous algor...
Roman Dementiev, Peter Sanders