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» Practical Performance of Efficient Minimum Cut Algorithms
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EDBT
2004
ACM
119views Database» more  EDBT 2004»
15 years 12 months ago
NNH: Improving Performance of Nearest-Neighbor Searches Using Histograms
Efficient search for nearest neighbors (NN) is a fundamental problem arising in a large variety of applications of vast practical interest. In this paper we propose a novel techniq...
Liang Jin, Nick Koudas, Chen Li
FPL
2004
Springer
144views Hardware» more  FPL 2004»
15 years 3 months ago
A Methodology for Energy Efficient FPGA Designs Using Malleable Algorithms
A recent trend towards integrating FPGAs with many heterogeneous components, such as memory systems, dedicated multipliers, etc., has made them an attractive option for implementin...
Jingzhao Ou, Viktor K. Prasanna
RECOMB
2010
Springer
15 years 1 months ago
naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing
Immense amounts of raw instrument data (i.e., images of fluorescence) are currently being generated using ultra high-throughput sequencing platforms. An important computational cha...
Wei-Chun Kao, Yun S. Song
BMCBI
2010
113views more  BMCBI 2010»
14 years 12 months ago
Efficient protein alignment algorithm for protein search
Background: Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups; therefore ...
Zaixin Lu, Zhiyu Zhao, Bin Fu
BIRD
2008
Springer
221views Bioinformatics» more  BIRD 2008»
15 years 1 months ago
Comparison of Exact String Matching Algorithms for Biological Sequences
Exact matching of single patterns in DNA and amino acid sequences is studied. We performed an extensive experimental comparison of algorithms presented in the literature. In additi...
Petri Kalsi, Hannu Peltola, Jorma Tarhio