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» Predicting protein functions with message passing algorithms
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UAI
2008
13 years 7 months ago
Tightening LP Relaxations for MAP using Message Passing
Linear Programming (LP) relaxations have become powerful tools for finding the most probable (MAP) configuration in graphical models. These relaxations can be solved efficiently u...
David Sontag, Talya Meltzer, Amir Globerson, Tommi...
CVPR
2011
IEEE
13 years 2 months ago
Learning Message-Passing Inference Machines for Structured Prediction
Nearly every structured prediction problem in computer vision requires approximate inference due to large and complex dependencies among output labels. While graphical models prov...
Stephane Ross, Daniel Munoz, J. Andrew Bagnell
UAI
2008
13 years 7 months ago
Convergent Message-Passing Algorithms for Inference over General Graphs with Convex Free Energies
Inference problems in graphical models can be represented as a constrained optimization of a free energy function. It is known that when the Bethe free energy is used, the fixedpo...
Tamir Hazan, Amnon Shashua
JMLR
2012
11 years 8 months ago
Message-Passing Algorithms for MAP Estimation Using DC Programming
We address the problem of finding the most likely assignment or MAP estimation in a Markov random field. We analyze the linear programming formulation of MAP through the lens of...
Akshat Kumar, Shlomo Zilberstein, Marc Toussaint
LION
2009
Springer
112views Optimization» more  LION 2009»
14 years 27 days ago
A Graph-Based Semi-supervised Algorithm for Protein Function Prediction from Interaction Maps
Abstract. Protein function prediction represents a fundamental challenge in bioinformatics. The increasing availability of proteomics network data has enabled the development of se...
Valerio Freschi