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GI
2009
Springer
15 years 2 months ago
Massively-Parallel Simulation of Biochemical Systems
: Understanding biological evolution prompts for a detailed understanding of the realized phenotype. Biochemical and gene regulatory dynamics are a cornerstone for the physiology o...
Jens Ackermann, Paul Baecher, Thorsten Franzel, Mi...
IPPS
2007
IEEE
15 years 4 months ago
An Optimizing Compiler for Parallel Chemistry Simulations
Well designed domain specific languages enable the easy expression of problems, the application of domain specific optimizations, and dramatic improvements in productivity for t...
Jun Cao, Ayush Goyal, Samuel P. Midkiff, James M. ...
ASPLOS
2010
ACM
15 years 1 months ago
Butterfly analysis: adapting dataflow analysis to dynamic parallel monitoring
Online program monitoring is an effective technique for detecting bugs and security attacks in running applications. Extending these tools to monitor parallel programs is challeng...
Michelle L. Goodstein, Evangelos Vlachos, Shimin C...
EUROMICRO
2004
IEEE
15 years 1 months ago
Towards Predicting Real-Time Properties of a Component Assembly
This paper addresses the prediction of timing properties of a component-based application already during the composition phase. At this stage, it is of vital importance to guarant...
Egor Bondarev, Peter H. N. de With, Michel R. V. C...
PPOPP
2009
ACM
15 years 10 months ago
Serialization sets: a dynamic dependence-based parallel execution model
This paper proposes a new parallel execution model where programmers augment a sequential program with pieces of code called serializers that dynamically map computational operati...
Matthew D. Allen, Srinath Sridharan, Gurindar S. S...