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BMCBI
2008
136views more  BMCBI 2008»
15 years 4 months ago
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptim
Background: RNAmute is an interactive Java application which, given an RNA sequence, calculates the secondary structure of all single point mutations and organizes them into categ...
Alexander Churkin, Danny Barash
BMCBI
2010
123views more  BMCBI 2010»
14 years 11 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
CDC
2010
IEEE
160views Control Systems» more  CDC 2010»
14 years 11 months ago
Model-on-Demand predictive control for nonlinear hybrid systems with application to adaptive behavioral interventions
This paper presents a data-centric modeling and predictive control approach for nonlinear hybrid systems. System identification of hybrid systems represents a challenging problem b...
Naresh N. Nandola, Daniel E. Rivera
WABI
2009
Springer
129views Bioinformatics» more  WABI 2009»
15 years 11 months ago
biRNA: Fast RNA-RNA Binding Sites Prediction
We present biRNA, a novel algorithm for prediction of binding sites between two RNAs based on minimization of binding free energy. Similar to RNAup approach [30], we assume the bin...
Hamidreza Chitsaz, Rolf Backofen, Süleyman Ce...
COMCOM
2006
88views more  COMCOM 2006»
15 years 4 months ago
Using attack graphs for correlating, hypothesizing, and predicting intrusion alerts
To defend against multi-step intrusions in high-speed networks, efficient algorithms are needed to correlate isolated alerts into attack scenarios. Existing correlation methods us...
Lingyu Wang, Anyi Liu, Sushil Jajodia