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» Presentations of Structures in Admissible Sets
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BMCBI
2010
95views more  BMCBI 2010»
15 years 27 days ago
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA
Background: In recent years, the number of available RNA structures has rapidly grown reflecting the increased interest on RNA biology. Similarly to the studies carried out two de...
Emidio Capriotti, Marc A. Martí-Renom
FOSSACS
2005
Springer
15 years 6 months ago
Mathematical Models of Computational and Combinatorial Structures
The general aim of this talk is to advocate a combinatorial perspective, together with its methods, in the investigation and study of models of computation structures. This, of cou...
Marcelo P. Fiore
121
Voted
BMCBI
2004
208views more  BMCBI 2004»
15 years 20 days ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
119
Voted
BMCBI
2008
140views more  BMCBI 2008»
15 years 27 days ago
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
Kazutaka Katoh, Hiroyuki Toh
104
Voted
CIE
2008
Springer
15 years 2 months ago
Perfect Local Computability and Computable Simulations
We study perfectly locally computable structures, which are (possibly uncountable) structures S that have highly effective presentations of their local properties. We show that eve...
Russell Miller, Dustin Mulcahey