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POPL
2004
ACM
16 years 29 days ago
Parsing expression grammars: a recognition-based syntactic foundation
For decades we have been using Chomsky's generative system of grammars, particularly context-free grammars (CFGs) and regular expressions (REs), to express the syntax of prog...
Bryan Ford
124
Voted
RECOMB
2008
Springer
16 years 29 days ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
93
Voted
RECOMB
2005
Springer
16 years 29 days ago
RNA-RNA Interaction Prediction and Antisense RNA Target Search
Abstract. Recent studies demonstrating the existence of special non-coding "antisense" RNAs used in post-transcriptional gene regulation have received considerable attent...
Can Alkan, Emre Karakoç, Joseph H. Nadeau, ...
99
Voted
RECOMB
2002
Springer
16 years 29 days ago
Phase-independent rhythmic analysis of genome-wide expression patterns
We introduce a model-based analysis technique for extracting and characterizing rhythmic expression pro les from genome-wide DNA microarray hybridization data. These patterns are ...
Christopher James Langmead, Anthony K. Yan, C. Rob...
117
Voted
OSDI
2006
ACM
16 years 28 days ago
Operating System Profiling via Latency Analysis
Operating systems are complex and their behavior depends on many factors. Source code, if available, does not directly help one to understand the OS's behavior, as the behavi...
Nikolai Joukov, Avishay Traeger, Rakesh Iyer, Char...
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