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181
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ALMOB
2006
138views more  ALMOB 2006»
15 years 6 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
ICPP
2009
IEEE
16 years 24 days ago
Speeding Up Distributed MapReduce Applications Using Hardware Accelerators
—In an attempt to increase the performance/cost ratio, large compute clusters are becoming heterogeneous at multiple levels: from asymmetric processors, to different system archi...
Yolanda Becerra, Vicenç Beltran, David Carr...
166
Voted
ISAAC
2004
Springer
125views Algorithms» more  ISAAC 2004»
15 years 11 months ago
Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs
RNA molecules whose secondary structures contain similar substructures often have similar functions. Therefore, an important task in the study of RNA is to develop methods for disc...
Jesper Jansson, Ngo Trung Hieu, Wing-Kin Sung
175
Voted
ICCS
2001
Springer
15 years 10 months ago
An Application of the Process Mechanism to a Room Allocation Problem Using the pCG Language
The Sisyphus-I initiative consists of a constraint satisfaction problem in which a group of people in a research environment must be allocated rooms. Numerous constraints are detai...
David Benn, Dan Corbett
176
Voted
ICS
2000
Tsinghua U.
15 years 9 months ago
Compiling object-oriented data intensive applications
Processing and analyzing large volumes of data plays an increasingly important role in many domains of scienti c research. High-level language and compiler support for developing ...
Renato Ferreira, Gagan Agrawal, Joel H. Saltz