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BMCBI
2007
123views more  BMCBI 2007»
15 years 4 months ago
Tracembler - software for in-silico chromosome walking in unassembled genomes
Background: Whole genome shotgun sequencing produces increasingly higher coverage of a genome with random sequence reads. Progressive whole genome assembly and eventual finishing ...
Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel
132
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BMCBI
2005
108views more  BMCBI 2005»
15 years 4 months ago
SplitTester: software to identify domains responsible for functional divergence in protein family
Background: Many protein families have undergone functional divergence after gene duplications such that current subgroups of the family carry out overlapping but distinct biologi...
Xiang Gao, Kent Vander Velden, Daniel F. Voytas, X...
IPPS
2007
IEEE
15 years 11 months ago
Software and Algorithms for Graph Queries on Multithreaded Architectures
Search-based graph queries, such as finding short paths and isomorphic subgraphs, are dominated by memory latency. If input graphs can be partitioned appropriately, large cluster...
Jonathan W. Berry, Bruce Hendrickson, Simon Kahan,...
MODELS
2007
Springer
15 years 11 months ago
11th International Workshop on Aspect-Oriented Modeling
This report summarizes the results and discussions from the 11th Workshop on Aspect-Oriented Modeling (AOM). The workshop was held in conjunction with the International Conference ...
Jörg Kienzle, Jeff Gray, Dominik Stein, Walte...
SCAM
2006
IEEE
15 years 10 months ago
Cross-Language Program Analysis and Refactoring
Many software systems are mixed-language systems today, i.e., they bind together components defined in different programming and specification languages. Analyses and refactorin...
Dennis Strein, Hans Kratz, Welf Löwe