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CIBCB
2007
IEEE
15 years 8 months ago
Hybrid Architecture for Accelerating DNA Codeword Library Searching
-- A large and reliable DNA codeword library is the key to the success of DNA based computing. Searching for the set of reliable DNA codewords is an NP-hard problem, which can take...
Qinru Qiu, Daniel J. Burns, Qing Wu, Prakash Mukre
APPT
2005
Springer
15 years 6 months ago
Experiments on Asynchronous Partial Gauss-Seidel Method
This paper presents design and experimental results of a parallel linear equation solver by asynchronous partial Gauss-Seidel method. The basic idea of this method is derived from ...
Hiroshi Nishida, Hairong Kuang
HPDC
2010
IEEE
15 years 5 months ago
Optimization of a parallel permutation testing function for the SPRINT R package
The statistical language R and Bioconductor package are favoured by many biostatisticians for processing microarray data. The amount of data produced by these analyses has reached...
Savvas Petrou, Terence M. Sloan, Muriel Mewissen, ...
ICPR
2008
IEEE
15 years 10 months ago
A new method to obtain the shift-table in Boyer-Moore's string matching algorithm
The Boyer-Moore algorithm uses two pre-computed tables for searching a string: skip, which utilizes the occurrence heuristic of symbols in a pattern, and shift, which utilizes the...
Yang Wang
IPPS
2007
IEEE
15 years 10 months ago
Implementing and Evaluating Automatic Checkpointing
As the size and popularity of computer clusters go on growing, fault tolerance is becoming a crucial factor to ensure high performance and reliability for applications. To provide...
Antonio S. Martins, Ronaldo Augusto Lara Gon&ccedi...