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BMCBI
2008
125views more  BMCBI 2008»
14 years 10 months ago
SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes
Background: It has been repeatedly observed that gene order is rapidly lost in prokaryotic genomes. However, persistent synteny blocks are found when comparing more or less distan...
Frédéric Lemoine, Bernard Labedan, O...
BMCBI
2006
123views more  BMCBI 2006»
14 years 10 months ago
An Automated Method for Rapid Identification of Putative Gene Family Members in Plants
Background: Gene duplication events have played a significant role in genome evolution, particularly in plants. Exhaustive searches for all members of a known gene family as well ...
Ronald L. Frank, Ajay Mane, Fikret Erçal
106
Voted
ICPPW
2009
IEEE
14 years 7 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
92
Voted
ICDE
2010
IEEE
211views Database» more  ICDE 2010»
15 years 5 months ago
ROX: The robustness of a run-time XQuery optimizer against correlated data
— We demonstrate ROX, a run-time optimizer of XQueries, that focuses on finding the best execution order of XPath steps and relational joins in an XQuery. The problem of join or...
Riham Abdel Kader, Peter A. Boncz, Stefan Manegold...
ICWE
2004
Springer
15 years 3 months ago
Automatic Interpretation of Natural Language for a Multimedia E-learning Tool
Abstract. This paper describes the new e-learning tool CHESt that allows students to search in a knowledge base for short (teaching) multimedia clips by using a semantic search eng...
Serge Linckels, Christoph Meinel