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BMCBI
2008
121views more  BMCBI 2008»
15 years 5 months ago
OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology
Background: Ontologies such as the Gene Ontology can enable the construction of complex queries over biological information in a conceptual way, however existing systems to do thi...
Kieran O'Neill, Alexander García Castro, An...
BMCBI
2004
208views more  BMCBI 2004»
15 years 4 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
SODA
1994
ACM
105views Algorithms» more  SODA 1994»
15 years 6 months ago
Approximate Data Structures with Applications
Abstract Yossi Matias Je rey Scott Vitter y Neal E. Young z In this paper we introduce the notion of approximate data structures, in which a small amount of error is tolerated in...
Yossi Matias, Jeffrey Scott Vitter, Neal E. Young
ICDE
2003
IEEE
138views Database» more  ICDE 2003»
16 years 6 months ago
Using State Modules for Adaptive Query Processing
We present a query architecture in which join operators are decomposed into their constituent data structures (State Modules, or SteMs), and dataflow among these SteMs is managed ...
Vijayshankar Raman, Amol Deshpande, Joseph M. Hell...
144
Voted
SMA
2006
ACM
101views Solid Modeling» more  SMA 2006»
15 years 11 months ago
A higher dimensional formulation for robust and interactive distance queries
We present an efficient and robust algorithm for computing the minimum distance between a point and freeform curve or surface by lifting the problem into a higher dimension. This...
Joon-Kyung Seong, David E. Johnson, Elaine Cohen