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BMCBI
2008
125views more  BMCBI 2008»
14 years 9 months ago
SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes
Background: It has been repeatedly observed that gene order is rapidly lost in prokaryotic genomes. However, persistent synteny blocks are found when comparing more or less distan...
Frédéric Lemoine, Bernard Labedan, O...
BMCBI
2008
104views more  BMCBI 2008»
14 years 9 months ago
InteroPORC: an automated tool to predict highly conserved protein interaction networks
teps. First, we abstracted protein interactions onto orthologous cluster links. For a given source interaction, if both proteins belonged to a cluster, we constructed a link betwee...
Magali Michaut, Samuel Kerrien, Luisa Montecchi-Pa...
IPM
2007
95views more  IPM 2007»
14 years 9 months ago
Using structural contexts to compress semistructured text collections
We describe a compression model for semistructured documents, called Structural Contexts Model (SCM), which takes advantage of the context information usually implicit in the stru...
Joaquín Adiego, Gonzalo Navarro, Pablo de l...
BMCBI
2005
124views more  BMCBI 2005»
14 years 9 months ago
Probabilistic annotation of protein sequences based on functional classifications
: One of the most evident achievements of bioinformatics is the development of methods that transfer biological knowledge from characterised proteins to uncharacterised sequences. ...
Emmanuel D. Levy, Christos A. Ouzounis, Walter R. ...
AICOM
2004
118views more  AICOM 2004»
14 years 9 months ago
Qualitative pattern matching with linguistic terms
Abstract. In the framework of possibility theory, a tool named `fuzzy pattern matching' (FPM) has been proposed in the eighties and since successfully used in flexible queryin...
Yannick Loiseau, Henri Prade, Mohand Boughanem