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» Separation logic and abstraction
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RECOMB
2010
Springer
15 years 4 months ago
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs
Abstract. In this paper, we focus on finding complex annotation patterns representing novel and interesting hypotheses from gene annotation data. We define a generalization of th...
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Ra...
WEA
2010
Springer
289views Algorithms» more  WEA 2010»
15 years 4 months ago
Experiments with a Generic Dantzig-Wolfe Decomposition for Integer Programs
Abstract We report on experiments with turning the branch-price-andcut framework SCIP into a generic branch-price-and-cut solver. That is, given a mixed integer program (MIP), our ...
Gerald Gamrath, Marco E. Lübbecke
BIBM
2009
IEEE
218views Bioinformatics» more  BIBM 2009»
15 years 4 months ago
Real-Time Non-rigid Registration of Medical Images on a Cooperative Parallel Architecture
Abstract—Unacceptable execution time of Non-rigid registration (NRR) often presents a major obstacle to its routine clinical use. Parallel computing is an effective way to accele...
Yixun Liu, Andriy Fedorov, Ron Kikinis, Nikos Chri...
CGO
2009
IEEE
15 years 4 months ago
Stream Compilation for Real-Time Embedded Multicore Systems
Abstract—Multicore systems have not only become ubiquitous in the desktop and server worlds, but are also becoming the standard in the embedded space. Multicore offers programabi...
Yoonseo Choi, Yuan Lin, Nathan Chong, Scott A. Mah...
SAC
2009
ACM
15 years 4 months ago
Visualization of clustered directed acyclic graphs with node interleaving
Graph drawing and visualization represent structural information ams of abstract graphs and networks. An important subset of graphs is directed acyclic graphs (DAGs). E-Spring alg...
Pushpa Kumar, Kang Zhang