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» Sequence Complexity for Biological Sequence Analysis
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82
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RECOMB
2001
Springer
16 years 29 days ago
Analysis techniques for microarray time-series data
We address possible limitations of publicly available data sets of yeast gene expression. We study the predictability of known regulators via time-series analysis, and show that l...
Vladimir Filkov, Steven Skiena, Jizu Zhi
99
Voted
STOC
2010
ACM
176views Algorithms» more  STOC 2010»
15 years 5 months ago
Complexity Theory for Operators in Analysis
We propose a new framework for discussing computational complexity of problems involving uncountably many objects, such as real numbers, sets and functions, that can be represente...
Akitoshi Kawamura and Stephen Cook
84
Voted
ISMB
2000
15 years 2 months ago
Integrative Analysis of Protein Interaction Data
We have developed a method for the integrative analysis of protein interaction data. It comprises clustering, visualization and data integration components. The method is generall...
Matthias Fellenberg, Kaj Albermann, Alfred Zollner...
123
Voted
ALMOB
2006
138views more  ALMOB 2006»
15 years 22 days ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
82
Voted
RECOMB
2005
Springer
16 years 29 days ago
A Partial Solution to the C-Value Paradox
In the half-century since the C-value paradox (the apparent lack of correlation between organismal genome size and morphological complexity) was described, there have been no expli...
Jeffrey M. Marcus