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» Sequence alignment for masquerade detection
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FINTAL
2006
15 years 1 months ago
MEDITE: A Unilingual Textual Aligner
This paper addresses a problem of natural language text alignment, from a humanities discipline called textual genetic criticism where different text versions must be compared. The...
Julien Bourdaillet, Jean-Gabriel Ganascia
BIBE
2007
IEEE
152views Bioinformatics» more  BIBE 2007»
14 years 10 months ago
SBLAST: Structural Basic Local Alignment Searching Tools using Geometric Hashing
While much research has been done on finding similarities between protein sequences, there has not been the same progress on finding similarities between protein structures. Here ...
Tom Milledge, Gaolin Zheng, Tim Mullins, Giri Nara...
CIBCB
2005
IEEE
15 years 3 months ago
The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space
— Part of the challenge of modeling protein sequences is their discrete nature. Many of the most powerful statistical and learning techniques are applicable to points in a Euclid...
Eleazar Eskin, Sagi Snir
JCB
2007
106views more  JCB 2007»
14 years 9 months ago
Clustered Sequence Representation for Fast Homology Search
We present a novel approach to managing redundancy in sequence databanks such as GenBank. We store clusters of near-identical sequences as a representative union-sequence and a se...
Michael Cameron, Yaniv Bernstein, Hugh E. Williams
BMCBI
2010
96views more  BMCBI 2010»
14 years 10 months ago
ModuleOrganizer: detecting modules in families of transposable elements
Background: Most known eukaryotic genomes contain mobile copied elements called transposable elements. In some species, these elements account for the majority of the genome seque...
Sébastien Tempel, Christine Rousseau, Fariz...