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BIBE
2007
IEEE
195views Bioinformatics» more  BIBE 2007»
15 years 9 months ago
Finding Clusters of Positive and Negative Coregulated Genes in Gene Expression Data
— In this paper, we propose a system for finding partial positive and negative coregulated gene clusters in microarray data. Genes are clustered together if they show the same p...
Kerstin Koch, Stefan Schönauer, Ivy Jansen, J...
PLDI
2004
ACM
15 years 8 months ago
Parametric regular path queries
Regular path queries are a way of declaratively expressing queries on graphs as regular-expression-like patterns that are matched against paths in the graph. There are two kinds o...
Yanhong A. Liu, Tom Rothamel, Fuxiang Yu, Scott D....
UAI
2003
15 years 4 months ago
Preference-based Graphic Models for Collaborative Filtering
Collaborative filtering is a very useful general technique for exploiting the preference patterns of a group of users to predict the utility of items to a particular user. Previou...
Rong Jin, Luo Si, ChengXiang Zhai
BIOINFORMATICS
2007
195views more  BIOINFORMATICS 2007»
15 years 2 months ago
Context-dependent clustering for dynamic cellular state modeling of microarray gene expression
Motivation: High-throughput expression profiling allows researchers to study gene activities globally. Genes with similar expression profiles are likely to encode proteins that ma...
Shinsheng Yuan, Ker-Chau Li
BMCBI
2008
126views more  BMCBI 2008»
15 years 2 months ago
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
Katerina Kechris, Hao Li