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» Shape Distributions and Protein Similarity
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RECOMB
2005
Springer
16 years 2 months ago
Improved Duplication Models for Proteome Network Evolution
Protein-protein interaction networks, particularly that of the yeast S. Cerevisiae, have recently been studied extensively. These networks seem to satisfy the small world property ...
Gürkan Bebek, Petra Berenbrink, Colin Cooper,...
IPPS
2007
IEEE
15 years 8 months ago
High Performance Database Searching with HMMer on FPGAs
1 Profile Hidden Markov Models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a set of not annotated protein sequences is compared...
Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt
IEEECIT
2010
IEEE
15 years 11 days ago
Term Weighting Approaches for Mining Significant Locations from Personal Location Logs
In this paper, we describe experiments into the application of term weighting techniques from text retrieval to support the automatic identification of significant locations from ...
Zhengwei Qiu, Cathal Gurrin, Aiden R. Doherty, Ala...
115
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IDA
2003
Springer
15 years 7 months ago
Fuzzy Clustering of Short Time-Series and Unevenly Distributed Sampling Points
This paper proposes a new clustering algorithm in the fuzzy-c-means family, which is designed to cluster time series and is particularly suited for short time series and those wit...
Carla S. Möller-Levet, Frank Klawonn, Kwang-H...
130
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PRIB
2009
Springer
100views Bioinformatics» more  PRIB 2009»
15 years 8 months ago
Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data
Abstract. The rapidly emerging field of metagenomics seeks to examine the genomic content of communities of organisms to understand their roles and interactions in an ecosystem. I...
Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, E...