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» Software Tools for Performance Modeling of Parallel Programs
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BMCBI
2004
156views more  BMCBI 2004»
15 years 2 months ago
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
Martin Schmollinger, Kay Nieselt, Michael Kaufmann...
IPPS
2002
IEEE
15 years 7 months ago
TCS: Estimating Gene Genealogies
Phylogentic analysis is becoming an increasingly important tool for customized drug treatments, epidemiological studies, and evolutionary analysis. The TCS method provides an impo...
Mark J. Clement, Quinn Snell, Peter Walker, David ...
IPPS
2007
IEEE
15 years 8 months ago
Performance Modelling of Necklace Hypercubes
The necklace hypercube has recently been introduced as an attractive alternative to the well-known hypercube. Previous research on this network topology has mainly focused on topo...
Sina Meraji, Hamid Sarbazi-Azad, Ahmad Patooghy
IEEEPACT
2007
IEEE
15 years 8 months ago
Architectural Support for the Stream Execution Model on General-Purpose Processors
There has recently been much interest in stream processing, both in industry (e.g., Cell, NVIDIA G80, ATI R580) and academia (e.g., Stanford Merrimac, MIT RAW), with stream progra...
Jayanth Gummaraju, Mattan Erez, Joel Coburn, Mende...
OOPSLA
2010
Springer
15 years 26 days ago
Language virtualization for heterogeneous parallel computing
As heterogeneous parallel systems become dominant, application developers are being forced to turn to an incompatible mix of low level programming models (e.g. OpenMP, MPI, CUDA, ...
Hassan Chafi, Zach DeVito, Adriaan Moors, Tiark Ro...