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BMCBI
2011
14 years 4 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
134
Voted
GLOBECOM
2009
IEEE
14 years 10 months ago
Minimum-Length Scheduling for Multicast Traffic under Channel Uncertainty
Abstract--We consider a set of multicast sources, each multicasting a finite amount of data to its corresponding destinations. The objective is to minimize the time to deliver all ...
Anna Pantelidou, Anthony Ephremides
119
Voted
INFORMS
2010
107views more  INFORMS 2010»
14 years 11 months ago
A Class Representative Model for Pure Parsimony Haplotyping
Haplotyping estimation from aligned Single Nucleotide Polymorphism (SNP) fragments has attracted more and more attention in the recent years due to its importance in analysis of m...
Daniele Catanzaro, Alessandra Godi, Martine Labb&e...
96
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ESCIENCE
2006
IEEE
15 years 6 months ago
Characterization of Computational Grid Resources Using Low-Level Benchmarks
An important factor that needs to be taken into account by end-users and systems (schedulers, resource brokers, policy brokers) when mapping applications to the Grid, is the perfo...
George Tsouloupas, Marios D. Dikaiakos
CLUSTER
2008
IEEE
15 years 7 months ago
A trace-driven emulation framework to predict scalability of large clusters in presence of OS Jitter
—Various studies have pointed out the debilitating effects of OS Jitter on the performance of parallel applications on large clusters such as the ASCI Purple and the Mare Nostrum...
Pradipta De, Ravi Kothari, Vijay Mann