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RECOMB
1998
Springer
15 years 10 months ago
A polyhedral approach to RNA sequence structure alignment
Ribonucleic acid (RNA) is a polymer composed of four bases denoted A, C, G, and U. It is a generally single-stranded molecule where the bases form hydrogen bonds within the same m...
Hans-Peter Lenhof, Knut Reinert, Martin Vingron
IPPS
2003
IEEE
15 years 11 months ago
Flexible CoScheduling: Mitigating Load Imbalance and Improving Utilization of Heterogeneous Resources
Fine-grained parallel applications require all their processes to run simultaneously on distinct processors to achieve good efficiency. This is typically accomplished by space sl...
Eitan Frachtenberg, Dror G. Feitelson, Fabrizio Pe...
IPPS
2010
IEEE
15 years 4 months ago
Head-body partitioned string matching for Deep Packet Inspection with scalable and attack-resilient performance
Abstract--Dictionary-based string matching (DBSM) is a critical component of Deep Packet Inspection (DPI), where thousands of malicious patterns are matched against high-bandwidth ...
Yi-Hua E. Yang, Viktor K. Prasanna, Chenqian Jiang
SPAA
2009
ACM
16 years 6 months ago
The weakest failure detector for wait-free dining under eventual weak exclusion
Dining philosophers is a classic scheduling problem for local mutual exclusion on arbitrary conflict graphs. We establish necessary conditions to solve wait-free dining under even...
Srikanth Sastry, Scott M. Pike, Jennifer L. Welch
IPPS
2005
IEEE
15 years 12 months ago
FROST: Revisited and Distributed
FROST (Fold Recognition-Oriented Search Tool) [6] is a software whose purpose is to assign a 3D structure to a protein sequence. It is based on a series of filters and uses a dat...
Vincent Poirriez, Rumen Andonov, Antoine Marin, Je...