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WSC
2000
14 years 11 months ago
Mathematical programming models of discrete event system dynamics
Analytical models for the dynamics of some discrete event systems are introduced where the system trajectories are solutions to linear and mixed-integer programs. 1 BACKGROUND The...
Lee Schruben
IPPS
2008
IEEE
15 years 4 months ago
Modeling and predicting application performance on parallel computers using HPC challenge benchmarks
A method is presented for modeling application performance on parallel computers in terms of the performance of microkernels from the HPC Challenge benchmarks. Specifically, the a...
Wayne Pfeiffer, Nicholas J. Wright
BMCBI
2008
128views more  BMCBI 2008»
14 years 9 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
JCB
2007
198views more  JCB 2007»
14 years 9 months ago
Bayesian Hierarchical Model for Large-Scale Covariance Matrix Estimation
Many bioinformatics problems can implicitly depend on estimating large-scale covariance matrix. The traditional approaches tend to give rise to high variance and low accuracy esti...
Dongxiao Zhu, Alfred O. Hero III
BMCBI
2010
122views more  BMCBI 2010»
14 years 9 months ago
Ovarian cancer classification based on dimensionality reduction for SELDI-TOF data
Background: Recent advances in proteomics technologies such as SELDI-TOF mass spectrometry has shown promise in the detection of early stage cancers. However, dimensionality reduc...
Kai-Lin Tang, Tong-Hua Li, Wen-Wei Xiong, Kai Chen