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ACL
2010
14 years 9 months ago
Exploring Syntactic Structural Features for Sub-Tree Alignment Using Bilingual Tree Kernels
We propose Bilingual Tree Kernels (BTKs) to capture the structural similarities across a pair of syntactic translational equivalences and apply BTKs to sub-tree alignment along wi...
Jun Sun, Min Zhang, Chew Lim Tan
IJDMB
2007
110views more  IJDMB 2007»
14 years 11 months ago
Transductive learning with EM algorithm to classify proteins based on phylogenetic profiles
: Phylogenetic profiles of proteins  strings of ones and zeros encoding respectively the presence and absence of proteins in a group of genomes  have recently been used to id...
Roger A. Craig, Li Liao
BMCBI
2011
14 years 6 months ago
Outer membrane proteins can be simply identified using secondary structure element alignment
Background: Outer membrane proteins (OMPs) are frequently found in the outer membranes of gram-negative bacteria, mitochondria and chloroplasts and have been found to play diverse...
Ren-Xiang Yan, Zhen Chen, Ziding Zhang
BMCBI
2004
125views more  BMCBI 2004»
14 years 11 months ago
A functional hierarchical organization of the protein sequence space
Background: It is a major challenge of computational biology to provide a comprehensive functional classification of all known proteins. Most existing methods seek recurrent patte...
Noam Kaplan, Moriah Friedlich, Menachem Fromer, Mi...
COMPLIFE
2005
Springer
15 years 5 months ago
Protein Annotation by Secondary Structure Based Alignments (PASSTA)
Abstract. Most software tools in homology recognition on proteins answer only a few specific questions, often leaving not much room for the interpretation of the results. We devel...
Constantin Bannert, Jens Stoye