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ICPP
2006
IEEE
15 years 11 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
DAC
2003
ACM
16 years 5 months ago
Behavioral consistency of C and verilog programs using bounded model checking
We present an algorithm that checks behavioral consistency between an ANSI-C program and a circuit given in Verilog using Bounded Model Checking. Both the circuit and the program ...
Edmund M. Clarke, Daniel Kroening, Karen Yorav
JCB
2008
106views more  JCB 2008»
15 years 4 months ago
Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment
Quantification of statistical significance is essential for the interpretation of protein structural similarity. To address this, a random model for protein structure comparison w...
James O. Wrabl, Nick V. Grishin
FOSSACS
2005
Springer
15 years 10 months ago
Branching Cells as Local States for Event Structures and Nets: Probabilistic Applications
We study the concept of choice for true concurrency models such as prime event structures and safe Petri nets. We propose a dynamic variation of the notion of cluster previously in...
Samy Abbes, Albert Benveniste
TCBB
2010
106views more  TCBB 2010»
14 years 11 months ago
Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants
In this paper we are interested in the problem of approximating trees by trees with a particular self-nested structure. Self-nested trees are such that all their subtrees of a give...
Christophe Godin, Pascal Ferraro