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RECOMB
2006
Springer
16 years 3 months ago
CONTRAlign: Discriminative Training for Protein Sequence Alignment
In this paper, we present CONTRAlign, an extensible and fully automatic framework for parameter learning and protein pairwise sequence alignment using pair conditional random field...
Chuong B. Do, Samuel S. Gross, Serafim Batzoglou
RECOMB
2003
Springer
16 years 3 months ago
Combining phylogenetic and hidden Markov models in biosequence analysis
A few models have appeared in recent years that consider not only the way substitutions occur through evolutionary history at each site of a genome, but also the way the process c...
Adam C. Siepel, David Haussler
VLDB
2004
ACM
144views Database» more  VLDB 2004»
16 years 3 months ago
Preserving mapping consistency under schema changes
Abstract. In dynamic environments like the Web, data sources may change not only their data but also their schemas, their semantics, and their query capabilities.When a mapping is ...
Yannis Velegrakis, Renée J. Miller, Lucian Popa
120
Voted
EDBT
2008
ACM
158views Database» more  EDBT 2008»
16 years 3 months ago
Expressive query specification through form customization
A form-based query interface is usually the preferred means to provide an unsophisticated user access to a database. Not only is such an interface easy to use, requiring no techni...
Magesh Jayapandian, H. V. Jagadish
119
Voted
ICSE
2005
IEEE-ACM
16 years 3 months ago
Binary refactoring: improving code behind the scenes
We present Binary Refactoring: a software engineering technique for improving the implementation of programs without modifying their source code. While related to regular refactor...
Eli Tilevich, Yannis Smaragdakis