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» Structured Sparsity in Structured Prediction
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BMCBI
2006
101views more  BMCBI 2006»
15 years 4 months ago
Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives
Background: Predicting residues' contacts using primary amino acid sequence alone is an important task that can guide 3D structure modeling and can verify the quality of the ...
Petras J. Kundrotas, Emil Alexov
RECOMB
2008
Springer
16 years 4 months ago
Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information
High-accuracy protein structure modeling demands accurate and very fast side chain prediction since such a procedure must be repeatedly called at each step of structure refinement....
Jing Zhang, Xin Gao, Jinbo Xu, Ming Li
SLIP
2009
ACM
15 years 11 months ago
Prediction of high-performance on-chip global interconnection
Different interconnection structures have been proposed to solve the performance limitation caused by scaling of on-chip global wires. In this paper, we give an overview of curre...
Yulei Zhang, Xiang Hu, Alina Deutsch, A. Ege Engin...
CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
15 years 10 months ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson
HPCA
1999
IEEE
15 years 8 months ago
Improving CC-NUMA Performance Using Instruction-Based Prediction
We propose Instruction-based Prediction as a means to optimize directory-based cache coherent NUMA shared-memory. Instruction-based prediction is based on observing the behavior o...
Stefanos Kaxiras, James R. Goodman