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» Structured Sparsity in Structured Prediction
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BMCBI
2008
136views more  BMCBI 2008»
15 years 2 months ago
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptim
Background: RNAmute is an interactive Java application which, given an RNA sequence, calculates the secondary structure of all single point mutations and organizes them into categ...
Alexander Churkin, Danny Barash
JMLR
2006
115views more  JMLR 2006»
15 years 1 months ago
Structured Prediction, Dual Extragradient and Bregman Projections
We present a simple and scalable algorithm for maximum-margin estimation of structured output models, including an important class of Markov networks and combinatorial models. We ...
Benjamin Taskar, Simon Lacoste-Julien, Michael I. ...
ACL
2009
14 years 11 months ago
Prediction of Thematic Rank for Structured Semantic Role Labeling
In Semantic Role Labeling (SRL), it is reasonable to globally assign semantic roles due to strong dependencies among arguments. Some relations between arguments significantly char...
Weiwei Sun, Zhifang Sui, Meng Wang
BMCBI
2010
129views more  BMCBI 2010»
15 years 2 months ago
Automatic prediction of catalytic residues by modeling residue structural neighborhood
Background: Prediction of catalytic residues is a major step in characterizing the function of enzymes. In its simpler formulation, the problem can be cast into a binary classific...
Elisa Cilia, Andrea Passerini
BMCBI
2004
122views more  BMCBI 2004»
15 years 1 months ago
A comprehensive comparison of comparative RNA structure prediction approaches
Background: An increasing number of researchers have released novel RNA structure analysis and prediction algorithms for comparative approaches to structure prediction. Yet, indep...
Paul P. Gardner, Robert Giegerich