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» Suffix trees for very large genomic sequences
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SIGMOD
2004
ACM
109views Database» more  SIGMOD 2004»
15 years 12 months ago
Piers: An Efficient Model for Similarity Search in DNA Sequence Databases
Growing interest in genomic research has resulted in the creation of huge biological sequence databases. In this paper, we present a hash-based pier model for efficient homology s...
Xia Cao, Shuai Cheng Li, Beng Chin Ooi, Anthony K....
IPPS
2009
IEEE
15 years 6 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
15 years 5 months ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
81
Voted
ECCB
2005
IEEE
15 years 5 months ago
SIMAP - The similarity matrix of proteins
Similarity Matrix of Proteins (SIMAP) (http://mips.gsf. 10 de/simap) provides a database based on a precomputed similarity matrix covering the similarity space formed by .4 millio...
Roland Arnold, Thomas Rattei, Patrick Tischler, Mi...
98
Voted
ICCV
2009
IEEE
16 years 4 months ago
Recognizing Actions by Shape-Motion Prototype Trees
A prototype-based approach is introduced for action recognition. The approach represents an action as a se- quence of prototypes for efficient and flexible action match- ing in ...
Zhe Lin, Zhuolin Jiang, Larry S. Davis