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ICASSP
2008
IEEE
15 years 3 months ago
Fusion of cleavage site detection and pairwise alignment for fast subcellular localization
In recent years, homology-based and signal-based methods have been proposed for predicting the subcellular localization of proteins. While it has been known that homology-based me...
Man-Wai Mak, Sun-Yuan Kung
ICMLA
2008
14 years 11 months ago
Inferring Sparse Kernel Combinations and Relevance Vectors: An Application to Subcellular Localization of Proteins
In this paper, we introduce two new formulations for multi-class multi-kernel relevance vector machines (mRVMs) that explicitly lead to sparse solutions, both in samples and in nu...
Theodoros Damoulas, Yiming Ying, Mark A. Girolami,...
99
Voted
BIBM
2010
IEEE
156views Bioinformatics» more  BIBM 2010»
14 years 7 months ago
Truncation of protein sequences for fast profile alignment with application to subcellular localization
We have recently found that the computation time of homology-based subcellular localization can be substantially reduced by aligning profiles up to the cleavage site positions of s...
Man-Wai Mak, Wei Wang, Sun-Yuan Kung
BMCBI
2005
117views more  BMCBI 2005»
14 years 9 months ago
An SVM-based system for predicting protein subnuclear localizations
Background: The large gap between the number of protein sequences in databases and the number of functionally characterized proteins calls for the development of a fast computatio...
Zhengdeng Lei, Yang Dai
87
Voted
ICONIP
2008
14 years 11 months ago
The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method
Abstract. The concept of Ensemble Learning has been shown to increase predictive power over single base learners. Given the bias-variancecovariance decomposition, diversity is char...
Alexandra Scherbart, Tim W. Nattkemper