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139
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IPPS
2006
IEEE
15 years 11 months ago
Parallel implementation and performance characterization of MUSCLE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen
145
Voted
TOMS
2011
101views more  TOMS 2011»
15 years 16 days ago
Partitioned Triangular Tridiagonalization
Abstract. We present a partitioned algorithm for reducing a symmetric matrix to a tridiagonal form, with partial pivoting. That is, the algorithm computes a factorization P AP T = ...
Miroslav Rozlozník, Gil Shklarski, Sivan To...
BIRD
2008
Springer
158views Bioinformatics» more  BIRD 2008»
15 years 7 months ago
A Computational Method for Reconstructing Gapless Metabolic Networks
Abstract. We propose a computational method for reconstructing metabolic networks. The method utilizes optimization techniques and graph traversal algorithms to discover a set of b...
Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko ...
JCP
2008
162views more  JCP 2008»
15 years 5 months ago
A Hypercube-based Scalable Interconnection Network for Massively Parallel Computing
An important issues in the design of interconnection networks for massively parallel computers is scalability. A new scalable interconnection network topology, called Double-Loop H...
Youyao Liu, Jungang Han, Huimin Du
ICML
1995
IEEE
16 years 6 months ago
Ant-Q: A Reinforcement Learning Approach to the Traveling Salesman Problem
In this paper we introduce Ant-Q, a family of algorithms which present many similarities with Q-learning (Watkins, 1989), and which we apply to the solution of symmetric and asymm...
Luca Maria Gambardella, Marco Dorigo