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» Systems biology, models, and concurrency
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95
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IPPS
2007
IEEE
15 years 7 months ago
SWARM: A Parallel Programming Framework for Multicore Processors
Due to fundamental physical limitations and power constraints, we are witnessing a radical change in commodity microprocessor architectures to multicore designs. Continued perform...
David A. Bader, Varun Kanade, Kamesh Madduri
104
Voted
FMCAD
2009
Springer
15 years 4 months ago
Industrial strength refinement checking
This paper discusses a methodology used on an industrial hardware development project to validate various cache-coherence protocol components. The idea is to use a high level model...
Jesse D. Bingham, John Erickson, Gaurav Singh, Fle...
97
Voted
RECOMB
2005
Springer
15 years 6 months ago
An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome
For studying gene regulatory and protein signaling networks, we have developed an interactive map for the Pseudomonas aeruginosa genome. We first represent genes, proteins and the...
Weihui Wu, Yongling Song, Shouguang Jin, Su-Shing ...
BMCBI
2008
200views more  BMCBI 2008»
15 years 28 days ago
Defining functional distances over Gene Ontology
Background: A fundamental problem when trying to define the functional relationships between proteins is the difficulty in quantifying functional similarities, even when well-stru...
Angela del Pozo, Florencio Pazos, Alfonso Valencia
132
Voted
BMCBI
2008
122views more  BMCBI 2008»
15 years 28 days ago
Reconstructing networks of pathways via significance analysis of their intersections
Background: Significance analysis at single gene level may suffer from the limited number of samples and experimental noise that can severely limit the power of the chosen statist...
Mirko Francesconi, Daniel Remondini, Nicola Nerett...