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» Systems biology, models, and concurrency
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BIOINFORMATICS
2007
83views more  BIOINFORMATICS 2007»
15 years 2 months ago
Exploring biological network structure using exponential random graph models
Motivation: The functioning of biological networks depends in large part on their complex underlying structure. When studying their systemic nature many modeling approaches focus ...
Zachary M. Saul, Vladimir Filkov
ISBI
2009
IEEE
15 years 8 months ago
Instance-Based Generative Biological Shape Modeling
Biological shape modeling is an essential task that is required for systems biology efforts to simulate complex cell behaviors. Statistical learning methods have been used to buil...
Tao Peng, Wei Wang, Gustavo K. Rohde, Robert F. Mu...
BIOSYSTEMS
2008
146views more  BIOSYSTEMS 2008»
15 years 2 months ago
The autonomy of biological individuals and artificial models
This paper aims to offer an overview of the meaning of autonomy for biological individuals and artificial models rooted in a specific perspective that pays attention to the histor...
Alvaro Moreno, Arantza Etxeberria, Jon Umerez
CMSB
2009
Springer
15 years 8 months ago
Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the Neurospora crassa Circadian Network
Circadian clocks are biochemical networks, present in nearly all living organisms, whose function is to regulate the expression of specific mRNAs and proteins to synchronise rhyth...
Ozgur E. Akman, Federica Ciocchetta, Andrea Degasp...
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FMICS
2009
Springer
15 years 5 months ago
Platform-Specific Restrictions on Concurrency in Model Checking of Java Programs
The main limitation of software model checking is that, due to state explosion, it does not scale to real-world multi-threaded programs. One of the reasons is that current software...
Pavel Parizek, Tomás Kalibera