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CANDC
2004
ACM
14 years 9 months ago
Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
We have addressed the distribution and abundance of 75 transcription factor (TF) families in complete genomes from 90 different bacterial and archaeal species. We found that the p...
Ernesto Pérez-Rueda, Julio Collado-Vides, L...
91
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BMCBI
2007
146views more  BMCBI 2007»
14 years 9 months ago
PubMed related articles: a probabilistic topic-based model for content similarity
Background: We present a probabilistic topic-based model for content similarity called pmra that underlies the related article search feature in PubMed. Whether or not a document ...
Jimmy J. Lin, W. John Wilbur
BMCBI
2008
119views more  BMCBI 2008»
14 years 9 months ago
Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction
Background: This paper describes and evaluates a sentence selection engine that extracts a GeneRiF (Gene Reference into Functions) as defined in ENTREZ-Gene based on a MEDLINE rec...
Julien Gobeill, Imad Tbahriti, Frédé...
KDID
2004
149views Database» more  KDID 2004»
14 years 11 months ago
Database Transposition for Constrained (Closed) Pattern Mining
Abstract. Recently, different works proposed a new way to mine patterns in databases with pathological size. For example, experiments in genome biology usually provide databases wi...
Baptiste Jeudy, François Rioult
METMBS
2004
162views Mathematics» more  METMBS 2004»
14 years 11 months ago
A Comparison of DNA Fragment Assembly Algorithms
As more research centers embark on sequencing new genomes, the problem of DNA fragment assembly for shotgun sequencing is growing in importance and complexity. Accurate and fast a...
Lishan Li, Sami Khuri