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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 6 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
MICRO
2008
IEEE
118views Hardware» more  MICRO 2008»
15 years 6 months ago
Notary: Hardware techniques to enhance signatures
Hardware signatures have been recently proposed as an efficient mechanism to detect conflicts amongst concurrently running transactions in transactional memory systems (e.g., Bulk...
Luke Yen, Stark C. Draper, Mark D. Hill
ICDCS
2007
IEEE
15 years 6 months ago
STEP: Sequentiality and Thrashing Detection Based Prefetching to Improve Performance of Networked Storage Servers
State-of-the-art networked storage servers are equipped with increasingly powerful computing capability and large DRAM memory as storage caches. However, their contribution to the...
Shuang Liang, Song Jiang, Xiaodong Zhang
GLOBECOM
2006
IEEE
15 years 5 months ago
Adaptive MIMO-OFDM Cellular System with Soft Handover between Distributed Base Station Antennas
— The joint cooperative processing of transmitted signal from several multiple-input multiple-output (MIMO) base station (BS) antenna heads is considered for users located within...
Antti Tölli, Marian Codreanu, Markku J. Juntt...
PPOPP
2006
ACM
15 years 5 months ago
Performance characterization of molecular dynamics techniques for biomolecular simulations
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwa...