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ICLP
2010
Springer
15 years 4 months ago
Efficient Solving of Time-dependent Answer Set Programs
Answer set programs with time predicates are useful to model systems whose properties depend on time, like for example gene regulatory networks. A state of such a system at time po...
Timur Fayruzov, Jeroen Janssen, Dirk Vermeir, Chri...
CPM
2004
Springer
107views Combinatorics» more  CPM 2004»
15 years 4 months ago
Sorting by Reversals in Subquadratic Time
The problem of sorting a signed permutation by reversals is inspired by genome rearrangements in computational molecular biology. Given two genomes represented as two signed permut...
Eric Tannier, Marie-France Sagot
91
Voted
CSB
2004
IEEE
142views Bioinformatics» more  CSB 2004»
15 years 4 months ago
FastR: Fast Database Search Tool for Non-Coding RNA
The discovery of novel non-coding RNAs has been among the most exciting recent developments in Biology. Yet, many more remain undiscovered. It has been hypothesized that there is ...
Vineet Bafna, Shaojie Zhang
DILS
2006
Springer
15 years 4 months ago
Link Discovery in Graphs Derived from Biological Databases
Public biological databases contain vast amounts of rich data that can also be used to create and evaluate new biological hypothesis. We propose a method for link discovery in biol...
Petteri Sevon, Lauri Eronen, Petteri Hintsanen, Ki...
BIRD
2008
Springer
158views Bioinformatics» more  BIRD 2008»
15 years 2 months ago
A Computational Method for Reconstructing Gapless Metabolic Networks
Abstract. We propose a computational method for reconstructing metabolic networks. The method utilizes optimization techniques and graph traversal algorithms to discover a set of b...
Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko ...