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BMCBI
2006
95views more  BMCBI 2006»
13 years 6 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
JCB
2006
125views more  JCB 2006»
13 years 6 months ago
Hypothesis Generation in Signaling Networks
Biological signaling networks comprise the chemical processes by which cells detect and respond to changes in their environment. Such networks have been implicated in the regulati...
Derek A. Ruths, Luay Nakhleh, M. Sriram Iyengar, S...
WWW
2005
ACM
14 years 7 months ago
Algorithmic detection of semantic similarity
Automatic extraction of semantic information from text and links in Web pages is key to improving the quality of search results. However, the assessment of automatic semantic meas...
Ana Gabriela Maguitman, Filippo Menczer, Heather R...
BMCBI
2010
115views more  BMCBI 2010»
13 years 6 months ago
Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat l
Background: Microarray technology is a powerful and widely accepted experimental technique in molecular biology that allows studying genome wide transcriptional responses. However...
Tung T. Nguyen, Richard R. Almon, Debra C. DuBois,...
ALMOB
2006
135views more  ALMOB 2006»
13 years 6 months ago
P-value based visualization of codon usage data
Two important and not yet solved problems in bacterial genome research are the identification of horizontally transferred genes and the prediction of gene expression levels. Both ...
Peter Meinicke, Thomas Brodag, Wolfgang Florian Fr...